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Example list where each element is a data frame representing a single ancestral recombination graph; this was generated using data from Farleigh et al. (2026); sample IDs have been anonymized.

Source: R/data.R
rattlesnake_args.Rd

A list where each element is a data frame representing a single ancestral recombination graph.

Usage

data(rattlesnake_args)

Format

A list with data frames with four columns:

chromosome

The chromsome information for each ARG.

start

The start position of each ARG.

end

The end position of each ARG.

tree

The ARG for the interval.

...

Source

Farleigh, K., Highland, D. K., Alderman, M. G., Francioli, Y., Hirst, S. R., Faber, E. M., ... & Schield, D. R. (2026). Evolution of genome-wide barriers to gene flow during complex speciation in rattlesnakes. Proceedings of the National Academy of Sciences, 123(21), e2609058123.

Examples

data(rattlesnake_args)
# \donttest{
data(rattlesnake_args)
data(rattlesnake_pops)

pop2 <- rattlesnake_pops[which(rattlesnake_pops$species == "pop2"),]
pop1 <- rattlesnake_pops[which(rattlesnake_pops$species == "pop1"),]

Test <- argstats(arg.dat = rattlesnake_args, pop1 = pop1$sample, pop2 = pop2$sample, pop1.name = "pop1", pop2.name = "pop2")# }