Code
R packages 
An R package to estimate commonly used population genomic statistics and to generate publication quality figures.
An R package to detect signals of differential introgression in hybrid individuals. Published in Farleigh et al. (2023).
Scripts and Workshop Code
Code to perform a statistical test to identify differential signals of local adaptation.
Scripts to automate demographic simulations in msprime. Scripts were developed to generate a null distribution to test for signals of differential introgression and were published in Farleigh et al. (2023).
Python scripts and demographic models used to model the demographic history of 3 and 4 populations. These models were originally published in Farleigh et al. (2021).
A tutorial to perform genome-environment association analysis using data published in Farleigh et al. (2021). I presented this tutorial at the City University of New York Bioinformatics Bootcamp in the summer of 2020.