A population assignment data frame to be used in Heterozygosity and Differentiation.
Source: R/data.R
HornedLizard_Pop.RdData frame containing 4 columns and 72 rows
Usage
data(HornedLizard_Pop)Format
A data frame with 4 columns and 72 rows:
- Sample
Sample Name
- Population
Population assignment according to sNMF results (see citation)
- Longitude
Longitude
- Latitude
Latitude
...
Source
Coordinates and population names taken from Farleigh, K., Vladimirova, S. A., Blair, C., Bracken, J. T., Koochekian, N., Schield, D. R., ... & Jezkova, T. (2021). The effects of climate and demographic history in shaping genomic variation across populations of the Desert Horned Lizard (Phrynosoma platyrhinos). Molecular Ecology, 30(18), 4481-4496.
Examples
# \donttest{
data("HornedLizard_Pop")
data("HornedLizard_VCF")
Test <- Differentiation(data = HornedLizard_VCF, pops = HornedLizard_Pop, write = FALSE)# }
#> [1] "vcfR object detected, proceeding to formatting."
#> Formatting has finished, moving onto calculations